PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g04318.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 280aa    MW: 29387.3 Da    PI: 9.7573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g04318.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-0884108226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               kt+lC+ f     Ck+Gd+C+FaHg
  Peaxi162Scf00003g04318.1  84 KTKLCNKFNSAEGCKFGDKCHFAHG 108
                               9***********************9 PP

2zf-CCCH34.43.6e-11247271126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ykt+lC +f + G C +G+rC+FaHg
  Peaxi162Scf00003g04318.1 247 YKTKLCENFTK-GSCTFGERCHFAHG 271
                               9**********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.9063249IPR000571Zinc finger, CCCH-type
PfamPF146080.983546No hitNo description
Gene3DG3DSA:4.10.1000.106.1E-1381112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-881112IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-482109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.01482110IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-684108IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.36E-13149224IPR004088K Homology domain, type 1
SMARTSM003221.2E-10152222IPR004087K Homology domain
PROSITE profilePS5008413.649153217IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.8E-14153222IPR004088K Homology domain, type 1
CDDcd001055.00E-12155217No hitNo description
PfamPF000131.2E-9155219IPR004088K Homology domain, type 1
SuperFamilySSF902296.02E-9244276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-16245277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577246273IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7246272IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8247271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDIRKRNRNE AGSNFNGSFK KPKPGGMGTF AFTAGCQFGE SCHFLHYVPG GYNAVAQMMN  60
LAPAPTSRNA AAPPIFNGNA PATKTKLCNK FNSAEGCKFG DKCHFAHGDW EIGKPIVPSH  120
EDPRAMGAGP IPGHFGGRME PAVSGRAASF GTSATAKISV DASLAGPIIG KSGVNSKQIC  180
RQTGAKLAIR DHETDQTLKN IELEGTFEQI SQASAMVREL INSLGSVGGQ GRAPAGRGGP  240
APAMSNYKTK LCENFTKGSC TFGERCHFAH GAAELRKSGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780696.11e-170PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016511462.11e-170PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-93C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLK4D2B71e-164K4D2B7_SOLLC; Uncharacterized protein
STRINGSolyc10g078750.1.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-70C3H family protein